PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.050930.1
Common NameCsa_1G560740, LOC101203059
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25904.1 Da    PI: 10.3206
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.050930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.21.9e-171150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ t+ kR+ g++KK +ELS+LC++e++ iifs+
  Cucsa.050930.1 11 IANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSP 50
                    89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.283149IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-25160IPR002100Transcription factor, MADS-box
CDDcd002661.40E-34285No hitNo description
SuperFamilySSF554554.32E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-10323IPR002100Transcription factor, MADS-box
PfamPF003197.2E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTRKKVKLAY IANDSARKAT YKKRKRGLMK KVSELSTLCG IEACAIIFSP YDSQPELWPS  60
PIGVQRVLSQ FKKMPEMEQS KKMVNQETFL RQRIAKANEQ LKKMRKDNRE KEITRLMFQS  120
LTAAKGLHGL NMLDLNDLGW LIDQNLKDIT IRIDSLKIKP SSSQPQAQVQ AQAQAQALPT  180
QPQTAAWLME LVSPQDQMGF VGDDMLLPFG DQTYNHNNAM WSNAFFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIANDSARKATYKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-170LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-170LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135760.11e-154PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK38e-65AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0A0LVS31e-152A0A0A0LVS3_CUCSA; Uncharacterized protein
STRINGXP_004163773.11e-153(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-66AGAMOUS-like 80
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]