PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.053890.1

Common Name

Csa_3G560210, LOC101216980

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 245aa MW: 27551.3 Da PI: 9.6415

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.053890.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.7	2e-31	16	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+G+rF Ptd+elv++yLk+kv + +l++ ++i++vdi+ ++Pw Lp + +++ +fFsk+++ +r++ g+Wk+ gk+k +ls+ Cucsa.053890.1 16 LPVGYRFCPTDQELVSHYLKRKVFHLPLPA-SIIPDVDIFLTDPWALPGDL---KEKRFFFSKQKSF------FRRSAGCGIWKSIGKEKLILSQ 100 799*************************.89***********544...3567899887664......6899999**********9 PP NAM 96 ..kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++lvg +ktLvf + ++++ t+Wvmheyrl Cucsa.053890.1 101 epMNQLVGFRKTLVFSESkFCERTSATRWVMHEYRL 136 887889******7625677889******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-38	11	164	IPR003441	NAC domain
PROSITE profile	PS51005	39.762	16	164	IPR003441	NAC domain
Pfam	PF02365	1.3E-22	17	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDNISTFVLN GGSIRLPVGY RFCPTDQELV SHYLKRKVFH LPLPASIIPD VDIFLTDPWA 60 LPGDLKEKRF FFSKQKSFFR RSAGCGIWKS IGKEKLILSQ EPMNQLVGFR KTLVFSESKF 120 CERTSATRWV MHEYRLPPSA SPTTPNSTQQ IEMGDWAVYS LFQKRRRPKR QGVEEKQRLS 180 VAKEASVLDL RVEDGWEFPQ PSSSSSSGVT EVSSNATDQE ESSSSLGLGL GFSSYFSQAH 240 VRGV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-25	12	165	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	169	QKRRRPKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681857	1e-115	LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
GenBank	LN713260	1e-115	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651545.1	0.0	PREDICTED: NAC domain-containing protein 68-like isoform X1
TrEMBL	A0A0A0LDI3	1e-147	A0A0A0LDI3_CUCSA; Uncharacterized protein
STRING	XP_004148002.1	1e-147	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-31	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Cucsa.053890.1
Entrez Gene	101216980

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]