PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.056080.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Nin-like

Protein Properties

Length: 221aa MW: 25826.3 Da PI: 6.0429

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.056080.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.6	1e-22	144	192	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 +++++d+ +y +lpi +A+k+L+vc TvLK+iCR+ G++RWP+Rki+s Cucsa.056080.1 144 GRMTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRS 192 679999*****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.587	133	213	IPR003035	RWP-RK domain
Pfam	PF02042	6.0E-20	146	192	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MLAGVHSRKL EIHGRLGMIS HAILEHKPIV NVDNISPQYQ MFDFCEKSCE EIKQFLLQYC 60 LKQILEDYNM IPDPMSNFYD ALCVGIDWFE NLNTDGFFQL SPDNSEDDEM EQPTPDCQNE 120 PPEQPEEQPP RRRPSLAAQR QRTGRMTVND VWEYLHLPIS EASKKLNVCN TVLKKICRRS 180 GLSRWPYRKI RSYERRIAAL RATMNSSYGD TRVRAEAEIE R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	2e-95	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	2e-95	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658444.1	1e-162	PREDICTED: protein RKD2-like
TrEMBL	A0A1S3BCG6	1e-142	A0A1S3BCG6_CUCME; protein RKD2-like isoform X1
STRING	XP_008445526.1	1e-143	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-11	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cucsa.056080.1