PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.056240.1
Common NameCsa_6G365140, LOC101207423
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YC
Protein Properties Length: 140aa    MW: 15718 Da    PI: 9.6777
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.056240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC53.26.5e-179911697
           NF-YC 16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivp 97
                      + e+P  r+kki+k d+d+ ++ +ea  l+s a elf+  l+ +s   a e+kr+t+k   i  av+r   i dfl+d  p
  Cucsa.056240.1  9 AIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHrSISDFLLDSLP 91
                    55679***************************************************************9862689*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-211277IPR009072Histone-fold
PfamPF008082.0E-201376IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471135.03E-181391IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEEEEFGEAI RPEFPTGRVK KIMKLDKDIG KVNSEALFLV SCATELFLKL LAEKSAESAA  60
EKKRKTVKLE HIRMAVKRHR SISDFLLDSL PLPSQPSDAP AKDENRTRAV VDKVAPEGTR  120
RIDDFFRRST KTKSAETES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144200.12e-95PREDICTED: DNA polymerase epsilon subunit C
TrEMBLA0A0A0KGV15e-94A0A0A0KGV1_CUCSA; Uncharacterized protein
STRINGXP_004144200.19e-95(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.18e-31nuclear factor Y, subunit C13
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]