PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.058770.1

Common Name

Csa_4G614170, LOC105435279

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 237aa MW: 27416.9 Da PI: 7.5307

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.058770.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.9	1.3e-29	20	73	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH+ Fv+ ve LGG ++AtPk+il++m+vkgL ++h+kSHLQ+YR+ Cucsa.058770.1 20 PRLRWTPELHRYFVQTVEILGGRNQATPKKILQMMGVKGLKISHIKSHLQMYRS 73 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.344	16	76	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-27	17	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-22	20	74	IPR006447	Myb domain, plants
SuperFamily	SSF46689	6.81E-15	20	73	IPR009057	Homeodomain-like
Pfam	PF00249	4.6E-8	21	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MKFCSSDRIG VRQYNKSELP RLRWTPELHR YFVQTVEILG GRNQATPKKI LQMMGVKGLK 60 ISHIKSHLQM YRSIKLENGS KCEDLVMRQG MKHRRRRTLH SCDIKTFFSS ITSSNEILRE 120 EDEFCRDKTK DEPSSNIKDR IIYQQDSESE SESEEECVGE SMLEDQTCDC ELTLSLKPSM 180 TQQIVERQLS DNQDNNTSSS NSNSNSLSSI SQLNFKFVKL KDFPHPHHHI NLDLTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-17	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-17	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-17	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-17	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-17	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-17	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-17	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-17	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-17	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681865	1e-84	LN681865.1 Cucumis melo genomic scaffold, anchoredscaffold01599.
GenBank	LN713261	1e-84	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653983.1	1e-174	PREDICTED: uncharacterized protein LOC105435279
TrEMBL	A0A0A0KZQ0	1e-173	A0A0A0KZQ0_CUCSA; Uncharacterized protein
STRING	XP_008466796.1	1e-145	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9186	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	5e-27	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.058770.1
Entrez Gene	105435279

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]