PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.058780.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 174aa MW: 20044.7 Da PI: 9.3086

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.058780.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131.7	5.3e-41	15	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPtdeel k++ + e+ik++diyk++PwdLpk + ++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+++s+ Cucsa.058780.1 15 LPGFRFHPTDEELK----------KPIAI-EIIKQIDIYKYDPWDLPKVSNVGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIFSTl 98 69********96..........78888.88***********888889************************************98 PP NAM 96 .........kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +glkk+Lv+y+g+a kg+ktdW+mhe+rl Cucsa.058780.1 99 klssndhnaNANIIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 140 8888776655566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.125	1	168	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-46	13	146	IPR003441	NAC domain
Pfam	PF02365	1.5E-19	16	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MAIVVDQEDD DQVILPGFRF HPTDEELKKP IAIEIIKQID IYKYDPWDLP KVSNVGDKEW 60 YFFCKRGRKY RNSIRPNRVT GSGFWKATGI DKPIFSTLKL SSNDHNANAN IIGLKKSLVY 120 YRGSAGKGTK TDWMMHEFRL PFNNNNIIPH QHDHNNAVSL SLNSLFPTND HNNA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-41	1	140	1	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681865	1e-159	LN681865.1 Cucumis melo genomic scaffold, anchoredscaffold01599.
GenBank	LN713261	1e-159	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144678.1	1e-110	PREDICTED: transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	3e-69	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0A0L479	1e-109	A0A0A0L479_CUCSA; Uncharacterized protein
STRING	XP_004144678.1	1e-110	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	4e-69	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Cucsa.058780.1

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]