PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.062320.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 79aa    MW: 8660.31 Da    PI: 9.8477
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.062320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.54.4e-143174346
          DUF260  3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46
                    aaCk++r +C+k+Cvla yfp ++  kf ++h +F+asn++kll
  Cucsa.062320.1 31 AACKIHRWRCTKKCVLAAYFPPSELLKFTIAHCIFSASNIIKLL 74
                    8*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.3282878IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-123174IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
FDFNSSPFSI VIASPSPSPT IQAFVVLSSY AACKIHRWRC TKKCVLAAYF PPSELLKFTI  60
AHCIFSASNI IKLLLVRP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147299.12e-19PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK082e-15LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A1S3CK123e-17A0A1S3CK12_CUCME; LOB domain-containing protein 1-like
STRINGXP_004147299.16e-19(Cucumis sativus)
STRINGXP_004161319.16e-19(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-17LOB domain-containing protein 11