PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.062530.1

Common Name

Csa_3G173030, LOC101212010

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 413aa MW: 44995.7 Da PI: 6.4443

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.062530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.7e-10	225	277	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ + Cucsa.062530.1 225 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDAN 277 9*****************************************99999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-15	221	285	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	223	286	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.1E-9	225	273	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-10	225	276	No hit	No description
SuperFamily	SSF57959	1.27E-10	225	275	No hit	No description
CDD	cd14703	2.71E-23	226	275	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDKEKPQSHG GGGGGFLHQS SRYSGFSSAE SSFNGKSEAT SSSMSFPPLA PSTNSDWGQS 60 GRGLSNDSTR FSNDISRMPE NPRRNVGHRR AHSEILTLPD DICFDSDLGI IGGADGPSLS 120 DDTEEDLLSM YLDMDKFNSS TATSANQVGD SSSPLVEAAA TSTDDIAVGL KERPRVRHQH 180 SQSMDGLTNI KPEMLVSGSD EASAADAKKA MSAAKLAELA LIDPKRAKRI WANRQSAARS 240 KERKMRYIAE LERKVQTLQT EATSLSTQLT LLQRDANGIT AENSELKLRL QTMEQQVHLQ 300 DALNEALKEE IQHLKVLTGQ AMPNGRSITN FASFGAGQQF YAPNNQAVHT LLTAQQFQQL 360 QIQSQQQQQQ HFQYQQLHQL QQQQAGDIRM KGSVSPQSSK DSASDTKPPT TC*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDKEKPQSHG GGGGGFLHQS SRYSGFSSAE SSFNGKSEAT SSSMSFPPLA PSTNSDWGQS  60
GRGLSNDSTR FSNDISRMPE NPRRNVGHRR AHSEILTLPD DICFDSDLGI IGGADGPSLS  120
DDTEEDLLSM YLDMDKFNSS TATSANQVGD SSSPLVEAAA TSTDDIAVGL KERPRVRHQH  180
SQSMDGLTNI KPEMLVSGSD EASAADAKKA MSAAKLAELA LIDPKRAKRI WANRQSAARS  240
KERKMRYIAE LERKVQTLQT EATSLSTQLT LLQRDANGIT AENSELKLRL QTMEQQVHLQ  300
DALNEALKEE IQHLKVLTGQ AMPNGRSITN FASFGAGQQF YAPNNQAVHT LLTAQQFQQL  360
QIQSQQQQQQ HFQYQQLHQL QQQQAGDIRM KGSVSPQSSK DSASDTKPPT TC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147658.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-142	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0A0L642	0.0	A0A0A0L642_CUCSA; Uncharacterized protein
STRING	XP_004160648.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-131	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.062530.1
Entrez Gene	101212010

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]