PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.065460.1

Common Name

Csa_4G290830, LOC101212231

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 300aa MW: 33812.6 Da PI: 8.1174

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.065460.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.7e-05	136	155	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Cucsa.065460.1 136 FSCPLCFKTFNRYNNMQMHM 155 89*****************9 PP
2	zf-C2H2	16.3	2.8e-05	220	242	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk F k + ++H +++ Cucsa.065460.1 220 FTCRKCGKAFAVKGDWRTHEKNC 242 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	136	163	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.61	136	158	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.4E-5	136	155	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	183	215	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	9.01E-7	201	240	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.0E-6	217	240	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	38	220	240	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.141	220	247	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
NTLKNMTTSH YNPSSSSSSS SQVLLPLLSL SPARVEQDHH HPHNNIIDHD HNVIDYDQSD 60 VTVALHLGLP TPSSSSNNSD LILRLSSTEI SDQEDHTHQL QELSSNNSIT SNSNGVNKGQ 120 YWIPTPTQIL IGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPQSLR GTQPTAMLRL 180 PCYCCAIGCR NNIDHPRSKP LKDFRTLQTH YKRKHGMKPF TCRKCGKAFA VKGDWRTHEK 240 NCGKLWHCTC GSDFKHKRSL KDHIKAFGLG HAAYGIDDHH NHHHSFDNED DDPASDIET*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ870274	0.0	GQ870274.1 Cucumis melo WIP1 (WIP1) gene, complete cds.
GenBank	GQ870275	0.0	GQ870275.1 Cucumis melo transposon Gyno-hAT putative transposase gene, complete cds; and WIP1 (WIP1) gene, complete cds.
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142226.2	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-120	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0A0KX98	0.0	A0A0A0KX98_CUCSA; Uncharacterized protein
STRING	XP_004142226.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-115	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.065460.1
Entrez Gene	101212231

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]