PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.065930.1
Common NameCsa_4G293330, LOC101218378
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 163aa    MW: 17897.7 Da    PI: 9.4242
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.065930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00134264123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F++   L  H  +H
  Cucsa.065930.1 42 FECKTCNRQFPSFQALGGHRASH 64
                    89**********99999998887 PP
2zf-C2H215.45.2e-0585107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg+ Fs+   L  H+r+H
  Cucsa.065930.1  85 HECGLCGQEFSSGQALGGHMRRH 107
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.8E-134166IPR007087Zinc finger, C2H2
SuperFamilySSF576678.41E-941107No hitNo description
SMARTSM003550.164264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.184269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SMARTSM003550.05685107IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.86885107IPR007087Zinc finger, C2H2
PfamPF139127.6E-1085108IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAAKRIREQF EASDIAKSLT LLSYGIQESS DLKFQPQNAA VFECKTCNRQ FPSFQALGGH  60
RASHKRPRTS VEEPKDTADL KQKIHECGLC GQEFSSGQAL GGHMRRHRVP PLAVAVAEKI  120
PVLKRSGSTR VMCLDLDLNL TPLENDLKLL FGKMAPAVNL VL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818880.0LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142087.11e-117PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD43e-42ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0A0KXE61e-116A0A0A0KXE6_CUCSA; Uncharacterized protein
STRINGXP_004161684.11e-117(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-44C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]