PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.066850.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CAMTA

Protein Properties

Length: 328aa MW: 37573.3 Da PI: 9.83

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.066850.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	124.9	3.5e-39	35	107	35	107
CG-1 35 ksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeele 107 ++gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqrr+yw+L+ + + Cucsa.066850.1 35 STGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDGDAS 107 68******************************************************************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	50.496	7	123	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-34	16	114	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.2E-32	36	108	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
CCNLIMSCYE SVGTLLKPCA NKILFAMLVN VAWASTGSLF LFDRKALRYF RKDGHRWRKK 60 KDGKTVKEAH EKLKAGSVDV LHCYYAHGED NENFQRRSYW MLDGDASLAC LVCQLIQGYR 120 LKVVKVVQHP FSCRSPHLLA QFMLYVHSIL VKQCPQEMRV WIPVGITPES LLMFVKNLEC 180 CASWKKGFIS KAGRLTLIKF VLNGIPVYYF SLFRAPNSVG KSREKCMRDF LWERGGLKMG 240 NLRLQNKALL NKWLWCFALD PESLSHGIIV SKHDTYPFNW VVKGIKGTHW NPWKDVALEL 300 PSFPFGLLHC GLEIVLDSSK SSVRYLV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681888	3e-71	LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBank	LN713262	3e-71	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14241	18	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	3e-39	signal responsive 1

Link Out ? help Back to Top
Phytozome	Cucsa.066850.1