PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.067270.1

Common Name

Csa_4G310210, LOC101218250

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 260aa MW: 31364.8 Da PI: 9.419

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.067270.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.9	5.4e-23	29	110	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+ e+++L+++r +++++++ k++ lW +v++km+++gf+rs +qCk+kw+nl +ryk +++++ k ++ ++p++d+l+ Cucsa.067270.1 29 WSVLETKELLAIRAALDKNFSEMKQNRMLWISVAEKMKAKGFNRSDEQCKCKWKNLVTRYKGCETMDPKA--LKH-QFPFYDDLH 110 9999**************************************************************95..444.79**997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.317	28	85	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.1E-4	28	84	IPR009057	Homeodomain-like
Pfam	PF13837	3.0E-19	28	111	No hit	No description
CDD	cd12203	2.83E-16	29	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEDFCDLRRA VFHRIGVNAE AAGDRFPPWS VLETKELLAI RAALDKNFSE MKQNRMLWIS 60 VAEKMKAKGF NRSDEQCKCK WKNLVTRYKG CETMDPKALK HQFPFYDDLH TIFTARMQKN 120 WWVEAENRSG GSKRKANEDP NGDRELENEE KTKTKNGTKK RKWKRDNPEE HERNLKEILK 180 DFVKREMEME REWREAFRVR EEERRLKEEE WRMKMEGIER EKMMMEILWR ENEDKRRERE 240 EARAQKTDAL ISALLTNLT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269\|PubMed:15310827}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269\|PubMed:15310827}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681884	0.0	LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653700.1	0.0	PREDICTED: trihelix transcription factor GT-3b isoform X2
Swissprot	O80450	9e-55	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	A0A0A0KZY4	0.0	A0A0A0KZY4_CUCSA; Uncharacterized protein
STRING	XP_008464200.1	1e-124	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	3e-43	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.067270.1
Entrez Gene	101218250

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]