PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.069470.1

Common Name

Csa_6G312040

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 119aa MW: 12789.2 Da PI: 10.8074

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.069470.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.8e-05	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F ++ L H++ H Cucsa.069470.1 32 FECQFCGREFANSQALGGHQNAH 54 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.12E-7	29	60	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	30	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.528	32	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MKLFGFSVTA STTSTDGATN LGAPCPNHNK RFECQFCGRE FANSQALGGH QNAHKRERQL 60 AKQLLPLQPT KHSRNFLAST PPSSTVGIWS AGRAPPPKYG IQVQARPAVV GGGEVNREX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	1e-144	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	1e-144	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150094.1	3e-83	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A0A0KI02	6e-82	A0A0A0KI02_CUCSA; Uncharacterized protein
STRING	XP_004150094.1	1e-82	(Cucumis sativus)
STRING	XP_004161397.1	1e-82	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3903	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	2e-15	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.069470.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]