PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.075970.2
Common NameCsa_5G587160, LOC101218194
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 368aa    MW: 41468.4 Da    PI: 8.8412
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.075970.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.11.6e-072382841763
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     A+rsR RK+++i+eLe+ v++L+a  ++   ele l+++   l +e+
  Cucsa.075970.2 238 AQRSRVRKLQYIAELERNVQALQANGSEVSAELEFLSQQNLILGMEN 284
                     89**********************************99998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0046227286IPR004827Basic-leucine zipper domain
CDDcd147032.32E-14231277No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-5238280No hitNo description
SuperFamilySSF579594.71E-5238280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MENSKVLSNM RNMISSGKHA LLPPKSPFPS GSSTYSDYLP NPIIGSRTVQ NPRVGNVNHH  60
RTSSESLLME EQPSWLDDLL NEPETPVQRG GHRRSSSDSF AYLDAGNVSN ENYTQDDSQC  120
KNMYLPSWAS QDFDSHQAPL YMKPSWNKQK NRTRELPPTT LTTNPGGLPS AKNIVLLESL  180
RTLSTPHEAN EFSLTTTEKL DSAETVVPDR KLSERMDSSH VKPGPTDTDN KRAKQQFAQR  240
SRVRKLQYIA ELERNVQALQ ANGSEVSAEL EFLSQQNLIL GMENKALKQR LESLSQEQLI  300
KYLEHEVLEK EIGRLRMLYQ QQQQPQPPPS TLKRTKSRDL ETQFAKLSLR QKDARSSSES  360
VAGPVQI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135341.10.0PREDICTED: uncharacterized protein At4g06598 isoform X1
TrEMBLA0A0A0KPT70.0A0A0A0KPT7_CUCSA; Uncharacterized protein
STRINGXP_004161923.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-101bZIP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]