PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.077010.1

Common Name

Csa_6G338090, LOC101206953

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 229aa MW: 25724.5 Da PI: 4.7411

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.077010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2.1e-38	33	91	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++++ Cucsa.077010.1 33 AAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKSRRAK 91 5679***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	23	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	34	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MFSPPMSDHQ QLPPPPPPFP SHLQRKWKPH LEAAPNCPRC ASTNTKFCYY NNYSLSQPRY 60 FCKSCRRYWT KGGSLRNVPV GGGCRKSRRA KSSKSSAISR PSKPDLSSQT TDSSSSASDI 120 DLAAVFARFL NSEPQTLTSS PESVDPLEIS EIFLEGLSDM LLDDENQREE EKQGIPGSYE 180 NVSFGLETEL GIDEEVWASP EMQEQVQELD SFSCNYYAND LRVSDQFCQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	0.0	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148826.2	1e-170	PREDICTED: dof zinc finger protein DOF1.2
TrEMBL	A0A0A0KGG2	1e-168	A0A0A0KGG2_CUCSA; Uncharacterized protein
STRING	XP_004148826.1	1e-165	(Cucumis sativus)
STRING	XP_004167953.1	1e-165	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	Cucsa.077010.1
Entrez Gene	101206953

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]