PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.077390.1

Common Name

Csa_6G355380, LOC101209131

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 338aa MW: 37945.9 Da PI: 7.286

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.077390.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.3	1.8e-50	36	164	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppG+rFhPtdeel+ +yL+ kv + + ++l v i+evd++++ePw+Lp ++k +ekewyfFs r +ky+tg r+nrat +gyWkatgkd++++ Cucsa.077390.1 36 LPPGYRFHPTDEELIAFYLASKVFKPSnFDL-GVnIAEVDLNRCEPWELP-EAKMGEKEWYFFSLRVRKYPTGLRTNRATVAGYWKATGKDRQIH 128 79******************988874666.555***********.566799************************************ PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +g + g+kktLvfykg ap+g kt+Wvmheyrl Cucsa.077390.1 129 SScNGVKLGTKKTLVFYKGGAPRGIKTKWVMHEYRL 164 989999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-58	33	187	IPR003441	NAC domain
PROSITE profile	PS51005	55.174	36	187	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	37	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MFGIEEVIGE LNREDDHEEK SGSGKEFIIK KHHRLLPPGY RFHPTDEELI AFYLASKVFK 60 PSNFDLGVNI AEVDLNRCEP WELPEAKMGE KEWYFFSLRV RKYPTGLRTN RATVAGYWKA 120 TGKDRQIHSS CNGVKLGTKK TLVFYKGGAP RGIKTKWVMH EYRLHSDLAS PNVCKQDEWV 180 LCRIIHKSGE KIKPKSSFQE TVPSPISLPS LLLNATQSIN HINIQSQPPL HNIQHHENGL 240 ESFIINNPHF IFQPNLFPFG LNNHDPHLTT PPPPPPSIQM TDTNYHPHFN PSLLLDGGCD 300 SQQASSFGVD SGGTLVDVAA YRGARGDQSD ENWSGGC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	36	187	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	36	187	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	36	187	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	36	187	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	36	187	20	168	NAC domain-containing protein 19
3swm_B	1e-47	36	187	20	168	NAC domain-containing protein 19
3swm_C	1e-47	36	187	20	168	NAC domain-containing protein 19
3swm_D	1e-47	36	187	20	168	NAC domain-containing protein 19
3swp_A	1e-47	36	187	20	168	NAC domain-containing protein 19
3swp_B	1e-47	36	187	20	168	NAC domain-containing protein 19
3swp_C	1e-47	36	187	20	168	NAC domain-containing protein 19
3swp_D	1e-47	36	187	20	168	NAC domain-containing protein 19
4dul_A	1e-47	36	187	17	165	NAC domain-containing protein 19
4dul_B	1e-47	36	187	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681822	0.0	LN681822.1 Cucumis melo genomic scaffold, anchoredscaffold00096.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657331.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X3
Swissprot	Q9S851	7e-75	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A0A0KFF1	0.0	A0A0A0KFF1_CUCSA; Uncharacterized protein
STRING	XP_004170964.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24850	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	6e-77	NAC family protein

Link Out ? help Back to Top
Phytozome	Cucsa.077390.1
Entrez Gene	101209131

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]