PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.077940.1
Common NameCsa_7G353010, LOC105436151
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 151aa    MW: 17393.8 Da    PI: 8.4687
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.077940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.13.9e-11129100128
             NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                     +g++ktLvfy++rap g kt+W+mhe+r+
  Cucsa.077940.1   1 MGMRKTLVFYRNRAPYGIKTSWIMHEFRI 29 
                     59*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.595148IPR003441NAC domain
SuperFamilySSF1019415.75E-16148IPR003441NAC domain
PfamPF023651.0E-4229IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGMRKTLVFY RNRAPYGIKT SWIMHEFRIQ NPRFPPKEDW VLCKVFHKSR CNNETTMDIT  60
EINRVSKTVP LASASSSLCS PSSYIQFTPA VDTNKLPWKN NIISNNVEEV GGGFKLNGVD  120
HREYSTIQQM KFEIEDSIQN DFIPFDYFTA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818027e-67LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBankLN7132557e-67LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659202.11e-109PREDICTED: NAC domain-containing protein 21/22-like
TrEMBLA0A0A0K6U01e-107A0A0A0K6U0_CUCSA; Uncharacterized protein
STRINGXP_004154466.11e-108(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-24NAC domain containing protein 74
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]