PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.078220.1

Common Name

Csa_7G341240, LOC101222941

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 312aa MW: 36356.3 Da PI: 4.8373

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.078220.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.3	4.7e-19	28	117	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ +Li a+++++ +l+rg+lk ++Weev+ + ++ +++++qC++k+e+l++r + +k++ + +t +sss++ yfd ++ Cucsa.078220.1 28 WTHQETIHLIHAYQDKWYSLERGQLKSNQWEEVAVTVaarcgySHFDPSKTSVQCRHKMEKLRQRLRSEKHRLSTGT-QSSSRWLYFDLMN 117 ********************************9998655544445589*********************95.66679***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.3E-16	27	118	No hit	No description
PROSITE profile	PS50090	6.168	27	90	IPR017877	Myb-like domain
SMART	SM00595	1.0E-4	35	124	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSTPRPPPLP SLSSSKSIST DKPHPIPWTH QETIHLIHAY QDKWYSLERG QLKSNQWEEV 60 AVTVAARCGY SHFDPSKTSV QCRHKMEKLR QRLRSEKHRL STGTQSSSRW LYFDLMNNLL 120 RGPLPISARP MSSIPFDNDQ DDHIAEKSDN YNSDYEEEER NNRSKSKSIS NILRWPIVAR 180 RTRNSSEEEE EEEEEEDNED EGEEEDNEDE GEEEERDIRV SRFREEYATA EEEEGKEMCS 240 KLAAEIRLFA DRLVGMENWK MDMMKEAEMN RIAMENKRME MILESEKKIV NSIAKAFGCP 300 PSKRLKIGHD S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681802	0.0	LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139629.1	0.0	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A0A0K6R6	0.0	A0A0A0K6R6_CUCSA; Uncharacterized protein
STRING	XP_004139629.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	8e-26	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.078220.1
Entrez Gene	101222941

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]