PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.084240.1
Common NameCsa_7G387730
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 469aa    MW: 51104.7 Da    PI: 9.1477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.084240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-057496123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Cucsa.084240.1 74 FVCEICNKGFQRDQNLQLHRRGH 96
                    89*******************88 PP
2zf-C2H213.30.00026150172123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  Cucsa.084240.1 150 WKCDKCSKVYAVQSDWKAHSKTC 172
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.63E-67396No hitNo description
PROSITE profilePS5015710.9497496IPR007087Zinc finger, C2H2
PfamPF121717.4E-57496IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355280115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.63E-6145170No hitNo description
SMARTSM00355130150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MSNSTSLSEE AASVSSTTRI HPDFTSLNPL LPSFSDIHHP PQKPKKKRSL PGNPDPDADV  60
IALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNNKEV KKKAYVCPEP  120
SCVHHHPSRA LGDLTGIKKH YCRKHGEKKW KCDKCSKVYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRKDS FITHRAFCDA LAEESARLSA NQLAMAAAVA AAAVSGATDV NINSSSATAA  240
VQSLFPYGNH HHQYSSPSLS SLPMASQTHV SLNPWEHHQN PNNPNHNLQI IKPEDSNSHP  300
PHNSHNFHQI PNFALSNSAS SNNNNNNPFG LIQEHQHHHQ QQQKVPSSST SSMITSPFRN  360
LHVSVHQGSN AATSAHLSAT ALLQKAATVG VSASKSGHHQ AESAGHITHF NMPNIPEFGP  420
PNHIDSLSQL GPDYATWQKT DRLTRDFLGL TGDGNGGAGG GSAGDGVVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35146210367Zinc finger protein JACKDAW
5b3h_F5e-35146210367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659290.10.0PREDICTED: protein indeterminate-domain 9
SwissprotQ9FFH31e-112IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A0A0K7A50.0A0A0A0K7A5_CUCSA; Uncharacterized protein
STRINGXP_004146996.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-110indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  5. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]