PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.086660.6

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

YABBY

Protein Properties

Length: 121aa MW: 13161.9 Da PI: 8.137

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.086660.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	101.3	2.1e-31	6	111	5	116
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +se+vCyv+CnfCntilavsvP +s+f++vtvrCGhC++llsvn+ + q+++ ++ + + +++ + +++ +++s+++s++ Cucsa.086660.6 6 MASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHK----QQQVNAGDSSK--DRASSSSSTKSTKIG 94 689***************************************************999722222....22222222222..222333333344444 PP YABBY 100 klsenedeevprvppvi 116 +l+++ +++ r+pp+ Cucsa.086660.6 95 SLDSSAERDQHRIPPIR 111 46677777777777755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.2E-33	7	104	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MSLDMMASER VCYVHCNFCN TILAVSVPCN SMFTLVTVRC GHCSNLLSVN MGASLQVVPP 60 QDSQQGHKQQ QVNAGDSSKD RASSSSSTKS TKIGSLDSSA ERDQHRIPPI RREFSFFSFL 120 *

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	6e-70	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	6e-70	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140176.1	9e-77	PREDICTED: putative axial regulator YABBY 2
Refseq	XP_011657596.1	9e-77	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	1e-28	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0A0KGY1	2e-75	A0A0A0KGY1_CUCSA; Uncharacterized protein
STRING	XP_004156064.1	3e-76	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-26	YABBY family protein

Link Out ? help Back to Top
Phytozome	Cucsa.086660.6

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]