PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.087050.1

Common Name

Csa_6G432280, LOC101207235

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HB-other

Protein Properties

Length: 507aa MW: 57044.9 Da PI: 7.1786

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.087050.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.4e-19	22	77	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t++ql +Le+++++++yp++e++ +L+++lgLte+q++ WF+ rR k+k+ Cucsa.087050.1 22 KKRKLKTPSQLVALEKFYNEHKYPTEEMKSQLSEELGLTEKQISGWFCHRRLKDKR 77 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-21	6	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.42E-17	17	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.054	18	78	IPR001356	Homeobox domain
SMART	SM00389	6.0E-17	20	82	IPR001356	Homeobox domain
Pfam	PF00046	8.4E-17	22	77	IPR001356	Homeobox domain
CDD	cd00086	2.03E-17	22	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MEEELGTAMH SEENKDSTEK NKKRKLKTPS QLVALEKFYN EHKYPTEEMK SQLSEELGLT 60 EKQISGWFCH RRLKDKRFCD TYTSVRQDRS SGVIQDHGSG LAQDSCGSTK NGDYWHIDPR 120 EVESQKPYGH ELATDNVLER RSQYTENVSN MENTSSESSS SLKDRLLSQS ENPYDTEVSR 180 YLTHEGAIPP SNPKALSSLR YKPSGYLKVK GEVENAAITA VKRQLGVQYR EDGPPLGVEF 240 QPLPPGAFES PAKGPSHDSY YVGNPLLPRS PDILTLKKQR AVGSRYEVHS SNMSSQDSYR 300 EEAAPTGTTC RPESQEKNSV YQLKKGSNYY NKTDTFPRQN SPLNVYEESG GLTFSSSSKR 360 DHKMNPSYNF PRSRSDSVSN NHGSYSSKIV SEPTEMQLHN HGSVASRSFY RSGYLDYNPK 420 KMPKEMFSGE EKAINESSDP VRGKIPPTNE LAVVNRCQLD FPRSDYAAKA SFSEKPGRKN 480 LTRRPITEMP YSFTVDEAED TSSSLD*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MEEELGTAMH SEENKDSTEK NKKRKLKTPS QLVALEKFYN EHKYPTEEMK SQLSEELGLT  60
EKQISGWFCH RRLKDKRFCD TYTSVRQDRS SGVIQDHGSG LAQDSCGSTK NGDYWHIDPR  120
EVESQKPYGH ELATDNVLER RSQYTENVSN MENTSSESSS SLKDRLLSQS ENPYDTEVSR  180
YLTHEGAIPP SNPKALSSLR YKPSGYLKVK GEVENAAITA VKRQLGVQYR EDGPPLGVEF  240
QPLPPGAFES PAKGPSHDSY YVGNPLLPRS PDILTLKKQR AVGSRYEVHS SNMSSQDSYR  300
EEAAPTGTTC RPESQEKNSV YQLKKGSNYY NKTDTFPRQN SPLNVYEESG GLTFSSSSKR  360
DHKMNPSYNF PRSRSDSVSN NHGSYSSKIV SEPTEMQLHN HGSVASRSFY RSGYLDYNPK  420
KMPKEMFSGE EKAINESSDP VRGKIPPTNE LAVVNRCQLD FPRSDYAAKA SFSEKPGRKN  480
LTRRPITEMP YSFTVDEAED TSSSLD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140200.1	0.0	PREDICTED: uncharacterized protein LOC101207235 isoform X1
TrEMBL	A0A0A0KH14	0.0	A0A0A0KH14_CUCSA; Uncharacterized protein
STRING	XP_004156045.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-87	HB-other family protein

Link Out ? help Back to Top
Phytozome	Cucsa.087050.1
Entrez Gene	101207235

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]