PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.087250.1

Common Name

Csa_4G014580, LOC105435339

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 67aa MW: 7631.9 Da PI: 11.5129

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.087250.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.5e-07	1	37	11	47
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + ++lG g Wk+Ia+++ ++t q+ s+ qky Cucsa.087250.1 1 LFLAGMQLLGQGAWKKIANYVVITKTHTQVASHAQKY 37 6899999*************889*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.334	1	42	IPR017930	Myb domain
SuperFamily	SSF46689	2.9E-9	1	42	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-6	1	37	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	9.3E-12	2	41	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.0E-4	2	37	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
LFLAGMQLLG QGAWKKIANY VVITKTHTQV ASHAQKYFLR QTSPKHKRTT EARIAQHMKR 60 LNNKDQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011654326.1	5e-34	PREDICTED: myb-like protein J
TrEMBL	A0A0A0KYZ4	1e-32	A0A0A0KYZ4_CUCSA; Uncharacterized protein
STRING	XP_008454484.1	2e-14	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16777	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	9e-14	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Cucsa.087250.1
Entrez Gene	105435339

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]