PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.087460.1
Common NameCsa_2G409480, LOC101211656
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 423aa    MW: 46802.9 Da    PI: 8.9975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.087460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.3e-065779123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++Cgk F r  nL+ H r H
  Cucsa.087460.1 57 FICEICGKGFQRDQNLQLHRRGH 79
                    89*******************88 PP
2zf-C2H213.70.00019133155123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  Cucsa.087460.1 133 WKCEKCSKRYAVQSDWKAHSKTC 155
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.8E-65679No hitNo description
Gene3DG3DSA:3.30.160.602.0E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.515779IPR007087Zinc finger, C2H2
SMARTSM003550.0165779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-4121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-6128153No hitNo description
SMARTSM00355130133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MIEKMADDEF SNCFLQIPLT GSNPSLLKKK RNLPGTPDPE AEVIALSPKT LLATNRFICE  60
ICGKGFQRDQ NLQLHRRGHN LPWKLKQRSN KEAKKRVYVC PEKSCVHHHP SRALGDLTGI  120
KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY KCDCGTLFSR RDSFITHRAF  180
CDALAEETAR VKAGTTISNL NYNLMGGWRD HDETAGIFMT QHFGSSMKPV TMKMSSNSVQ  240
MIGGMMMNNS GGGMYGEDSV WGNQVQMGNY YYNENQGLMV NNGGRVCSLY SHEFQQVNET  300
QMGNMSATAL LQKAAEIGAT SSASSNTVTR SAAPSLSLLQ IQQQGFLFNN GSEFCNTNNN  360
PIVVVENNGS EMYTAKRRRS QSEFECGNGN GTTGTGTGET RDFLGVGAKT ICHASTSING  420
WI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-36129201372Zinc finger protein JACKDAW
5b3h_F8e-36129201372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819160.0LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138788.10.0PREDICTED: zinc finger protein MAGPIE
SwissprotQ9FFH31e-130IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A0A0LQA10.0A0A0A0LQA1_CUCSA; Uncharacterized protein
STRINGXP_004138788.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-131C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  5. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]