PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.087530.1
Common NameCsa_2G408430, LOC101212135
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 454aa    MW: 49597.6 Da    PI: 6.1426
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.087530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.23.7e-28169223156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR++
  Cucsa.087530.1 169 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIECLTRHNVASHLQKYRSH 223
                     5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.242166225IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-27167226IPR009057Homeodomain-like
SuperFamilySSF466893.4E-18167226IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-26169223IPR006447Myb domain, plants
PfamPF002495.0E-8172221IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLALSPIRSG NKDEKQGEME RFSIGGDDFP DFDDDTNLLD SINFDDLFVG INDGDVLPDL  60
EMDPELLAEF SVSGGEESEV NASVSLEKFD DNTLIGNKDN DDDEDQKDFD FRSSSQVVDQ  120
EILSKREDEL ATPTNVIEVS PLVKDGGDKS IKPLKASSSQ SKNSQGKRKV KVDWTPELHR  180
RFVQAVEQLG VDKAVPSRIL ELMGIECLTR HNVASHLQKY RSHRKHLLAR EAEAASWSQR  240
RQMYGGGGGG GGGGKREVSP WGAPPTMGFP PMTPMHPHFR PLHVWGHPPA MDQSLLHVWP  300
KHLPHSPSPP PPPPTPPPSS WPHTAAPPPP PDSSYWHHHH HHQRVPNGLT SGTPCFPQPI  360
PTTRFGGASF SVIPPPHPMY KAAEPTTSIG RSPTHPPLDS YPSKESIDSA IGDVLAKPWL  420
PLPLGLKPPS LDSVKVELQR QGVPKIPPST CAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15166221257ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819160.0LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138790.10.0PREDICTED: transcription activator GLK1-like
TrEMBLA0A0A0LQW90.0A0A0A0LQW9_CUCSA; Uncharacterized protein
STRINGXP_004158587.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-68GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]