PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.087750.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 228aa    MW: 25835.5 Da    PI: 9.225
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.087750.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000436991223
                    EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                    +C+ C+++++++ +L  H +  H
  Cucsa.087750.1 69 SCSVCPRVYPTSRLLSLHVSEaH 91
                    6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.374166IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804366IPR007087Zinc finger, C2H2
SMARTSM003555.36891IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807091IPR007087Zinc finger, C2H2
SMARTSM003550.2106131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLTLMIFHFY LFCPILKVAL DLTEDEKLQL HNMAVDARSE IFCPIVGCGA HLKSLDDFED  60
HYNSRHTASC SVCPRVYPTS RLLSLHVSEA HDSFFQAKVA RGYDMYECLV EGCGLKFKSY  120
KSRHQHLVDK HKFSASFEFF KKAHPSKKQR QKTYRKQASQ GREETSKMEV ENEIMDGLIS  180
GVSKLSTSDS TPSSISFGRR HTRGLTFVPR AVQREKVSDS STAGTKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152KKQRQKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138793.11e-154PREDICTED: zinc finger protein 511
TrEMBLA0A0A0LMY31e-153A0A0A0LMY3_CUCSA; Uncharacterized protein
STRINGXP_004166425.11e-154(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.16e-79zinc ion binding;nucleic acid binding;zinc ion binding