PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.088250.1

Common Name

Csa_2G403160

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 373aa MW: 42723.5 Da PI: 7.1521

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.088250.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.8e-11	79	119	3	43
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 ++k++rr+++NReAAr+sR RKk ++++Le+ +L + + Cucsa.088250.1 79 DDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEE 119 589***************************85444433333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-8	77	139	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.335	79	123	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.8E-7	80	120	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.3E-8	81	126	No hit	No description
SuperFamily	SSF57959	2.89E-7	81	125	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.3E-29	166	241	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MIGQQSMSSS STQLYASRMG IYEPFHQINS WPNAFGSRLD TSISPITKVD DCVDNKPEFV 60 PFESMDHLES SQEMNKPIDD KVQRRLAQNR EAARKSRMRK KVYVQQLETS RLKLAQLEEE 120 LERTRQQKGN GCLVDTSHIG FSGLVNPGIA AFEMEYNHWV EEQQRQINEL RKALQVHTTD 180 IELQILVESS LNHYHNLFCM KAKVAKADVF YLMSGVWRSS AERFFLWIGG FRPSELLNVL 240 KPYLEPLNEQ QRADIHKLQQ SSRQAEDALT QGMEKLHQNL SLSIAGDPIG SYISQMGDGM 300 EKFEALESFI SQPSVCYSFL EQADHLRQQT LKRMSHLLTT RQAAQGLLAL GEYFHRLRVL 360 SSLWATRPRE PA*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MIGQQSMSSS STQLYASRMG IYEPFHQINS WPNAFGSRLD TSISPITKVD DCVDNKPEFV  60
PFESMDHLES SQEMNKPIDD KVQRRLAQNR EAARKSRMRK KVYVQQLETS RLKLAQLEEE  120
LERTRQQKGN GCLVDTSHIG FSGLVNPGIA AFEMEYNHWV EEQQRQINEL RKALQVHTTD  180
IELQILVESS LNHYHNLFCM KAKVAKADVF YLMSGVWRSS AERFFLWIGG FRPSELLNVL  240
KPYLEPLNEQ QRADIHKLQQ SSRQAEDALT QGMEKLHQNL SLSIAGDPIG SYISQMGDGM  300
EKFEALESFI SQPSVCYSFL EQADHLRQQT LKRMSHLLTT RQAAQGLLAL GEYFHRLRVL  360
SSLWATRPRE PA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	1e-141	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	1e-141	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138645.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Refseq	XP_011649910.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Refseq	XP_011649911.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Swissprot	Q93ZE2	1e-139	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A0A0LMH3	0.0	A0A0A0LMH3_CUCSA; Uncharacterized protein
STRING	XP_004138645.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-137	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.088250.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]