PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.088960.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 246aa    MW: 27829.3 Da    PI: 4.6276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.088960.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87e-125597754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+ YI++L
  Cucsa.088960.1 55 LSERNRRKKLNDRLLALRAVVPNI-----TKMDKASIIKDAIGYIQEL 97
                    57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.984897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-1251101No hitNo description
SuperFamilySSF474593.93E-1653114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1354103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1554117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-95597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MENILDEYGY YWETNMFLQT EDLDSWGLDE AFYGSYDSSS PDGTLSLSEA SKNILSERNR  60
RKKLNDRLLA LRAVVPNITK MDKASIIKDA IGYIQELRAE ENQIETEISN LESNVSKSTT  120
SSEDDDHGNN NGNTRKRGTN NCNRQIREKP SSFPIEILDL NVNYMGEKTM VVSMTCQRRN  180
NAVFKICQVI ESLKLKIIMA NITVVANRLL STLFLEAERA EEEELKVKIE KAIAAISDQQ  240
NPMSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1353107963Transcription factor MYC2
5gnj_B1e-1353107963Transcription factor MYC2
5gnj_E1e-1353107963Transcription factor MYC2
5gnj_F1e-1353107963Transcription factor MYC2
5gnj_G1e-1353107963Transcription factor MYC2
5gnj_I1e-1353107963Transcription factor MYC2
5gnj_M1e-1353107963Transcription factor MYC2
5gnj_N1e-1353107963Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818478e-77LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132598e-77LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648963.11e-180PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-75BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3BQT41e-146A0A1S3BQT4_CUCME; transcription factor bHLH35-like isoform X2
STRINGXP_008451126.11e-145(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-55bHLH family protein