PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.089670.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 211aa    MW: 23686.7 Da    PI: 9.3748
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.089670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-122365246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +++eEd ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
   Cucsa.089670.1 23 GGFSEEEDNIICSLFISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 65
                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.344116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-11228IPR009057Homeodomain-like
SuperFamilySSF466896.27E-21371IPR009057Homeodomain-like
PROSITE profilePS5129421.6071771IPR017930Myb domain
SMARTSM007174.6E-112169IPR001005SANT/Myb domain
PfamPF002493.7E-112365IPR001005SANT/Myb domain
CDDcd001678.34E-82567No hitNo description
Gene3DG3DSA:1.10.10.603.0E-182968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
LKRCGKSCRL RWLNYLRPNI KHGGFSEEED NIICSLFISI GSRWSIIAAQ LPGRTDNDIK  60
NYWNTRLKKK LLGTPKQYFS NINKLSSHGN YRDTAQALTN SGIERLQLQM QLHQSTFSFN  120
NASTLWPPMS MKSPTVSSSS TELGRLEGGG GRGGVEFVKG MDGSKESLYW WGYDFDAKSG  180
GATKLWETAA SVDVQLEEIF KEFEQFSHSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1937140108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818471e-105LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132591e-105LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149093.11e-134PREDICTED: transcription factor MYB32
SwissprotQ9FKL27e-53MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1S3BTZ91e-125A0A1S3BTZ9_CUCME; transcription factor MYB36
STRINGXP_004149093.11e-134(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-53myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]