PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.089840.1

Common Name

Csa_3G609250

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Protein Properties

Length: 125aa MW: 14572.9 Da PI: 9.9878

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.089840.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.3	1.3e-13	12	114	1	94
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-S CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldg 86 f+k+l++ dv++s grl l k+f++++ g++ ++++ +t++d++gr++++ ++++ ++ yvltk W++F k+n+L g+f+ + + Cucsa.089840.1 12 FVKQLMKTDVTESqGRLALHKEFVTRNlipmfnrGENLKNGISVTVYDSEGREYDMIFKFWTSK-LYVLTKSWNKFYKSNNLTrPGEFISVWMFR 105 89******99989**************9666668899***********999996.89*************8789988654333 PP S.SEE..EE CS B3 87 r.sefelvv 94 + +++l++ Cucsa.089840.1 106 HvVNRKLCF 114 335555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.4E-16	9	105	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.04E-15	10	116	No hit	No description
SuperFamily	SSF101936	2.16E-16	10	108	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.1E-7	12	120	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-10	12	118	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.629	13	120	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
IQNIIGECSP PFVKQLMKTD VTESQGRLAL HKEFVTRNLI PMFNRGENLK NGISVTVYDS 60 EGREYDMIFK FWTSKLYVLT KSWNKFYKSN NLTRPGEFIS VWMFRHVVNR KLCFAIMRGD 120 AEQP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	1e-119	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	1e-119	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022145065.1	1e-41	putative B3 domain-containing protein At4g03170
TrEMBL	A0A0A0LC65	9e-88	A0A0A0LC65_CUCSA; Uncharacterized protein
STRING	XP_008460492.1	3e-70	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4148	19	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	4e-26	B3 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.089840.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]