PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.091230.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 130aa MW: 15161.5 Da PI: 10.4091

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.091230.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.9e-10	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e +++a +++G + Wk++a+ m R+ +++ Cucsa.091230.1 46 QWSKEEIESFYEAYRKYGQD-WKKVASSMH-QRSTEMVE 82 6***************99.*******.99998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0011	43	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.88E-12	43	92	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-7	46	85	IPR009057	Homeodomain-like
Pfam	PF00249	5.1E-9	46	86	IPR001005	SANT/Myb domain
CDD	cd00167	5.82E-6	47	89	No hit	No description
PROSITE profile	PS50090	6.098	47	86	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MAPPKNLKSL KKRPLRSNDP SAEENYRSSQ TSKKRTKKLS DKLGPQWSKE EIESFYEAYR 60 KYGQDWKKVA SSMHQRSTEM VETLYNMNKA YLSLPEGTAS VVGLIALMTD YYNVMVFKNF 120 RRLIKYKFN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	1e-46	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	1e-46	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011648834.1	4e-73	PREDICTED: protein ALWAYS EARLY 2-like isoform X1
Swissprot	Q6A331	1e-38	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	A0A0A0LLU7	1e-71	A0A0A0LLU7_CUCSA; Uncharacterized protein
STRING	XP_004144824.1	4e-66	(Cucumis sativus)
STRING	XP_004158759.1	1e-65	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	2e-36	DNA binding

Link Out ? help Back to Top
Phytozome	Cucsa.091230.1

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]