PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.092430.1
Common NameCsa_1G423050, LOC105434494
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 256aa    MW: 29662.1 Da    PI: 6.1756
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.092430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like55.81e-17207256151
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     k+r+ Wt+eL e+F+ea eqL G+++ +P +il+lm+   Lt+e+v+SHLQ
  Cucsa.092430.1 207 KKRVSWTKELDEKFIEAYEQL-GEKERVPNNILKLMNDSRLTRENVASHLQ 256
                     68*******************.99999***********************9 PP
2Response_reg616.2e-21241321109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl +d + + ++ l+q+l+k +y +v++ +++ ea++llk+ +  +D++++ +    mdG+++l+ i  e  ++p+++v+a++e +++ + +  G
  Cucsa.092430.1  24 VLAIDNNIVCLRYLAQLLKKCQY-KVTASTEAAEAIRLLKDGKrtFDIVITNVVRQYMDGFKILQIIGVEM-DIPVVMVSANEELDTMMRGVVEG 116
                     7889999****************.***************988888**********************6544.7********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     akd+l Kp+  +el++
  Cucsa.092430.1 117 AKDYLIKPVRLQELRN 132
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-3021164No hitNo description
SuperFamilySSF521721.71E-2722166IPR011006CheY-like superfamily
SMARTSM004481.1E-1622134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.97523138IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-1724133IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.59E-1625138No hitNo description
PROSITE profilePS5129412.982204256IPR017930Myb domain
SuperFamilySSF466891.79E-12205256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-18205256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17207256IPR006447Myb domain, plants
PfamPF002491.2E-7209256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEDFDNHIPL KAEEDDQFPI GLKVLAIDNN IVCLRYLAQL LKKCQYKVTA STEAAEAIRL  60
LKDGKRTFDI VITNVVRQYM DGFKILQIIG VEMDIPVVMV SANEELDTMM RGVVEGAKDY  120
LIKPVRLQEL RNIWQHVLRK RLARKSPNRP NLLLLEEQLV LEEEENHNIS TAKRVAINYQ  180
QDYEQSKEIV KLNDGNNVAD DSSSKKKKRV SWTKELDEKF IEAYEQLGEK ERVPNNILKL  240
MNDSRLTREN VASHLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818132e-37LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132562e-37LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648496.10.0PREDICTED: two-component response regulator ARR10-like
TrEMBLA0A0A0LX870.0A0A0A0LX87_CUCSA; Uncharacterized protein
STRINGXP_008453705.12e-98(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1955035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-60response regulator 10
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]