PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.093390.1
Common NameCsa_1G256210, WRKY4
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 508aa    MW: 55002.7 Da    PI: 6.1728
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.093390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86e-25194250259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vk+ + +rsYY+Ct+++C +kk +e++++ ++++ei+Y+++H h+
  Cucsa.093390.1 194 SDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKK-IECCDDSGQTTEIVYKSQHSHD 250
                     7********************************98.*********************7 PP
2WRKY98.35.1e-31369425359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e + e+p++v+itY+g H+h+
  Cucsa.093390.1 369 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHD 425
                     9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.488188252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-21188252IPR003657WRKY domain
SuperFamilySSF1182902.88E-20191252IPR003657WRKY domain
SMARTSM007747.8E-24193251IPR003657WRKY domain
PfamPF031061.2E-17195250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-32352427IPR003657WRKY domain
PROSITE profilePS5081132.179362427IPR003657WRKY domain
SuperFamilySSF1182903.53E-27363427IPR003657WRKY domain
SMARTSM007743.0E-35367426IPR003657WRKY domain
PfamPF031067.0E-24369424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MAEPESFGTH QLGSSNAATE GQEDDEEEMD DSDDESEVDL GGEGGGTGSE FKPTELTTGS  60
SLNEALVTGS LSETLTVASS AENGPSDGLQ PDEGAELKQQ APSSHSEPLA VEATQTDKVQ  120
EQNRLQLTIF KGPDSDQSPT SVTQSISSYA SSNLSEHKLS PKRVQKICKP EPSQKNFFNH  180
KTPSSVPNAR TPASDGYNWR KYGQKQVKSP KGSRSYYKCT YSECFAKKIE CCDDSGQTTE  240
IVYKSQHSHD PPRKISTPKE SKLVPYVEPV VKKIIAEHSR RVINDSDSPT PSKEPLREAA  300
IVVFERKRQH SNDSNGNDEY KIKDENDDEP GTKQIVKKSS AGNSGTPLKP GKKPKFVVHA  360
AGDVGISGDG YRWRKYGQKM VKGNPHPRNY YRCTSAGCPV RKHIESAVEN PNAVIITYKG  420
VHDHDTPVPK KRHGPPSALL VAAAAPASMS SNTQPKKTDV VESQISSTQW SVDAEGELTG  480
EALELGGEKA MESARTLLSI GFEIKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25358427877Probable WRKY transcription factor 4
2lex_A3e-25358427877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840090.0GU984009.1 Cucumis sativus WRKY protein (WRKY4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267648.10.0probable WRKY transcription factor 32-like
SwissprotP595831e-125WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLE7CEV80.0E7CEV8_CUCSA; WRKY protein
STRINGXP_004161869.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-104WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]