PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.094040.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 150aa    MW: 16871.2 Da    PI: 10.6712
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.094040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13246347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +W++eE+  ++ + k+lG+g+W+ I++ + ++Rt+ q+ s+ qky
   Cucsa.094040.1  2 PWSEEEHRTFLIGLKKLGKGDWRGISKNFVTTRTPTQVASHAQKY 46
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.827151IPR017930Myb domain
SMARTSM007172.2E-6149IPR001005SANT/Myb domain
PfamPF002492.4E-11246IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-15249IPR009057Homeodomain-like
CDDcd001671.83E-9247No hitNo description
TIGRFAMsTIGR015573.1E-16250IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.5E-11246IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
KPWSEEEHRT FLIGLKKLGK GDWRGISKNF VTTRTPTQVA SHAQKYFLRK MNANDKKKRR  60
ASLFDIPEIK NNFSRDCPAS GELPSQILLP KNNSPDNQSQ VNNLGTQLIN RFPHLCLDTP  120
HFIPQQTNGS SSPSSIPFVV INNSLFLNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15559KKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818744e-99LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132614e-99LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146936.22e-99PREDICTED: myb-like protein I
SwissprotQ9FKF93e-33M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A0A0KXN04e-98A0A0A0KXN0_CUCSA; Uncharacterized protein
STRINGXP_004166642.11e-100(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-35MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]