PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.094100.1
Common NameCsa_4G023020, LOC101214089
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 118aa    MW: 13059.7 Da    PI: 11.1924
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.094100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-172575255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr+++ +g+++AeIrdp+      r++lg++++  +Aaka++ a+ +l+g
  Cucsa.094100.1 25 HFRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTYDSDIDAAKAYDCAAFRLRG 75
                    69*******.**********8542..4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-302484IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-222585IPR016177DNA-binding domain
PfamPF008477.1E-132575IPR001471AP2/ERF domain
SMARTSM003803.0E-332589IPR001471AP2/ERF domain
PROSITE profilePS5103223.8152583IPR001471AP2/ERF domain
PRINTSPR003676.0E-132637IPR001471AP2/ERF domain
CDDcd000182.56E-183383No hitNo description
PRINTSPR003676.0E-136585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MSTQACGAET KVAVVEASGG KGRRHFRGVR RRPWGKFAAE IRDPTRKGSR VWLGTYDSDI  60
DAAKAYDCAA FRLRGRKAIL NFPLEAGEPD PPAAADRKRG RGQKWRNIPK ALMATNEX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-272484464ATERF1
3gcc_A5e-272484464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-142LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-142LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146939.12e-80PREDICTED: ethylene-responsive transcription factor ERF106
SwissprotQ9LY058e-39EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A0A0KXM45e-79A0A0A0KXM4_CUCSA; DNA binding protein
STRINGXP_004167218.18e-80(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.15e-29ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]