PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.094760.1

Common Name

Csa_4G015740, LOC101211375

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 256aa MW: 29762.5 Da PI: 6.0134

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.094760.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.5e-26	75	165	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y+++vGF+vr++++++s+ n++++ ++fvCskeg+r+++ +++ + tr gC+a++++ +++ gkw vtk++++HnH l Cucsa.094760.1 75 EFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVCrKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLL 165 6***************************************9987723333448899****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-23	75	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDCQSSHTFD SDESDIDIQT EIYEKGGSID DIRNDLDFCL RDDDKVAEQS VVDLPMDGVE 60 PYIGMEFSSR DEAREFYVNY GRRVGFTVRI HHNRRSRVNN QVIGQDFVCS KEGFRAKKYV 120 CRKDRILPAP PITREGCQAM MRLALRDGGK WAVTKFVKDH NHLLLSPSKV PWKGSGKNLS 180 EDEKDKRIRE LSLELYNERQ KYKRKCAAYE EQLKTIWKEL EMHTECISNK VAEVVKSIRE 240 VEEEEESKGS NERWI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152100.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0A0KW49	0.0	A0A0A0KW49_CUCSA; Uncharacterized protein
STRING	XP_004167865.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-37	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.094760.1
Entrez Gene	101211375

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]