PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.095210.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 216aa    MW: 24756.8 Da    PI: 9.8047
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.095210.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.61.6e-294111555128
             NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     e+e yfFs+r+ ky++g+r+nrat sgyWkatg d++++s+ +++l+g kktLvfy+g+ p+g +tdWvmheyrl
  Cucsa.095210.2  41 ERERYFFSTREAKYSNGRRSNRATGSGYWKATGIDRKIVSTkENRLIGFKKTLVFYTGKPPNGLRTDWVMHEYRL 115
                     5689***********************************9867778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.6941147IPR003441NAC domain
SuperFamilySSF1019411.83E-3541147IPR003441NAC domain
PfamPF023656.6E-1444115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGFTRFGLDF FLFFCFIYFE IRGGFSVDGF CEFFGGSGDL ERERYFFSTR EAKYSNGRRS  60
NRATGSGYWK ATGIDRKIVS TKENRLIGFK KTLVFYTGKP PNGLRTDWVM HEYRLVGSSE  120
APPSSFNDGL ELPTLNPNWV LCRIFLKKRS TRERDEKKKN NCKPVFHQFL RTRNDTDLNL  180
SPCSSSSGSS GVTEISVNNH QEQEETSSCN SFRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-304115370171NO APICAL MERISTEM PROTEIN
1ut4_B3e-304115370171NO APICAL MERISTEM PROTEIN
1ut7_A3e-304115370171NO APICAL MERISTEM PROTEIN
1ut7_B3e-304115370171NO APICAL MERISTEM PROTEIN
3swm_A3e-304115373174NAC domain-containing protein 19
3swm_B3e-304115373174NAC domain-containing protein 19
3swm_C3e-304115373174NAC domain-containing protein 19
3swm_D3e-304115373174NAC domain-containing protein 19
3swp_A3e-304115373174NAC domain-containing protein 19
3swp_B3e-304115373174NAC domain-containing protein 19
3swp_C3e-304115373174NAC domain-containing protein 19
3swp_D3e-304115373174NAC domain-containing protein 19
4dul_A3e-304115370171NAC domain-containing protein 19
4dul_B3e-304115370171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-146LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-146LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152126.11e-128PREDICTED: NAC transcription factor 25
SwissprotQ9FY938e-51NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0A0KTV61e-126A0A0A0KTV6_CUCSA; NAC domain-containing protein
STRINGXP_004152126.11e-127(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-53NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]