PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.095280.3
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 124aa    MW: 13730 Da    PI: 8.0691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.095280.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.6e-0612501154
                    HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     R d++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Cucsa.095280.3 12 ERKDKLGERIMALQQLVSPY-----GKTDTASVLLEAMEYIQFL 50
                    57899999*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.813150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0013956IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-111164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-91160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-61355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MVFQVLTLFL QERKDKLGER IMALQQLVSP YGKTDTASVL LEAMEYIQFL HEQVKVLSAP  60
YLQSTPTVLL QEVEPCSHSL RSRGLCLVPI SCTAGVARSN GADIWAPVKT ISPKFEKHIS  120
PFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818742e-79LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132612e-79LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152130.11e-79PREDICTED: transcription factor bHLH113-like
RefseqXP_008454045.11e-79PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ7XJU29e-51BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0A0KYW43e-78A0A0A0KYW4_CUCSA; Uncharacterized protein
TrEMBLA0A1S3BYX63e-78A0A1S3BYX6_CUCME; transcription factor bHLH113-like isoform X2
STRINGXP_008454043.12e-78(Cucumis melo)
STRINGXP_004152130.15e-79(Cucumis sativus)
STRINGXP_004156961.15e-79(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.54e-53bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]