PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.095860.1
Common NameCsa_4G007070, LOC101205393
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 220aa    MW: 24189.1 Da    PI: 4.6958
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.095860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-193685255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +gr++AeIrdps+   + r++lg+f+tae+Aa a+++a+++++g
  Cucsa.095860.1 36 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEDAALAYDRAARSMRG 85
                    678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.69E-303592No hitNo description
PROSITE profilePS5103220.5343693IPR001471AP2/ERF domain
SMARTSM003801.0E-343699IPR001471AP2/ERF domain
PfamPF008472.1E-113785IPR001471AP2/ERF domain
PRINTSPR003674.5E-83748IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-213794IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-293793IPR001471AP2/ERF domain
PRINTSPR003674.5E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDFKTSKTNS PSSSSSKPRK SKQQDGQQPL QQEPTRFLGV RRRPWGRYAA EIRDPSTKER  60
HWLGTFDTAE DAALAYDRAA RSMRGSKART NFVYSDMPHG SSVTSIISPD ESQLYPPTPT  120
QPNHLCFDPF TTSSFPGNDW LPDSDSYQPV TAFMDNGITN DDAELPPLPP DASSSYNDCA  180
AMVDWSTASS SSTSSFMGFN SNAVFPSFPD TSTSDGFGFX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-203792359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152327.11e-159PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9FZ907e-44ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A0A0KYM71e-158A0A0A0KYM7_CUCSA; Uncharacterized protein
STRINGXP_004165549.11e-131(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]