PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.096680.3

Common Name

Csa_4G003720, LOC101212435

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 232aa MW: 26457.9 Da PI: 4.177

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.096680.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.6	1.7e-30	9	66	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d+++++itY+++Hnh+ Cucsa.096680.3 9 DFWSWRKYGQKPIKGSPYPRGYYRCSTTkGCSAKKQVERCKTDGSMFIITYTSSHNHP 66 99*********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-31	3	68	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-26	5	68	IPR003657	WRKY domain
SMART	SM00774	1.0E-35	7	67	IPR003657	WRKY domain
Pfam	PF03106	1.5E-25	9	66	IPR003657	WRKY domain
PROSITE profile	PS50811	30.561	9	68	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MKNEGPPPDF WSWRKYGQKP IKGSPYPRGY YRCSTTKGCS AKKQVERCKT DGSMFIITYT 60 SSHNHPGPNI STLNLDQNYQ QEIDPPQPLD RDDDEDHHDL VPNQAQDHDN NSNNDDKNSI 120 IISQSTEEEE VEEVEEEEED ELLLVEDEEK KGIEKIKDEC LDQEPIIISS SSNSSSCCDE 180 LMIIKTKKSE IENHDHFFDE LEELPIPPPF SSTLMRSSYS FDEIRISAAP S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-21	9	69	18	80	Disease resistance protein RRS1
5w3x_D	1e-21	9	69	18	80	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152355.1	1e-170	PREDICTED: probable WRKY transcription factor 27
TrEMBL	A0A0A0KVB9	1e-168	A0A0A0KVB9_CUCSA; Uncharacterized protein
STRING	XP_004152355.1	1e-169	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-31	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Cucsa.096680.3
Entrez Gene	101212435

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]