PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.096930.1
Common NameCsa_4G001970, LOC101203357
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 273aa    MW: 30868.3 Da    PI: 5.1247
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.096930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-1967115355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Cucsa.096930.1  67 YRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNTAEEAARAYDREARKIRG 115
                     9*******.**********954...3************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-3266124IPR001471AP2/ERF domain
SMARTSM003803.0E-3766129IPR001471AP2/ERF domain
PROSITE profilePS5103223.6766123IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2266124IPR016177DNA-binding domain
CDDcd000189.19E-3467124No hitNo description
PRINTSPR003679.1E-126778IPR001471AP2/ERF domain
PfamPF008471.1E-1167115IPR001471AP2/ERF domain
PRINTSPR003679.1E-1289105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MCGGAIIADF IPRRDGQRVT ASDIWPNSSL FHFNKIPSNQ VSTPLKRTPL PSSEASKPKK  60
RQRKNLYRGI RQRPWGKWAA EIRDPRKGIR VWLGTFNTAE EAARAYDREA RKIRGKKAKV  120
NFPNEDDTYS IQAPIPQFHP HLYTVPENSE FPYDLNQIGD FTSTHFPVAI EEQSGSGSED  180
SYPPPERFGV KESSEEKPEQ KVSVIAAVEE ENEVQKLSEE LMAYENFMKF YQIPYLDGQS  240
TVTNPAEEQV VGDLWSFDDE DGLHGSVSSS EL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2267123360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1259760.0AB125976.1 Cucumis melo CMe-ERF2 mRNA for ERF-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152238.10.0PREDICTED: ethylene-responsive transcription factor ERF073-like
TrEMBLA0A0A0KT750.0A0A0A0KT75_CUCSA; Uncharacterized protein
STRINGXP_004152238.10.0(Cucumis sativus)
STRINGXP_004156828.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-37ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]