PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.100920.1
Common NameCsa_6G483360, LOC101203420
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 464aa    MW: 51549.3 Da    PI: 4.4941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.100920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1484.7e-4671332128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ppGfrFhPt  elv++yLkkkv ++kl++  vi e+diyk+ PwdLp k ++k+++ ++yfF++r++kya+g r nrat+ gyWk+tg+d++v+ 
  Cucsa.100920.1   7 PPGFRFHPTHVELVMFYLKKKVMQRKLPT-GVICELDIYKYAPWDLPaKsCLKGGDLKYYFFCPRERKYASGARMNRATEFGYWKSTGRDRTVHY 100
                     89***************************.99**************96347777888************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg  ktL+f++g+apkg +tdWvmheyrl
  Cucsa.100920.1 101 -ENKEVGQIKTLTFFRGKAPKGAQTDWVMHEYRL 133
                     .8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-535156IPR003441NAC domain
PROSITE profilePS5100551.4476156IPR003441NAC domain
PfamPF023659.4E-237133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MWKRSPPPGF RFHPTHVELV MFYLKKKVMQ RKLPTGVICE LDIYKYAPWD LPAKSCLKGG  60
DLKYYFFCPR ERKYASGARM NRATEFGYWK STGRDRTVHY ENKEVGQIKT LTFFRGKAPK  120
GAQTDWVMHE YRLDDKNLSL EDAAQDAYVL CVIFQKDGPG PRNGAQYGAP FKEEDWEEDG  180
LEEVDSLEVD LSSGLSVLPN KEPLNSFAPD SSLTQTNVFG CSPASCISEN VAATSKEIPP  240
IASGNIASVE IPGNCNIPDD IFTIADIFPE HGNVNLVDAN AFQASAGAPI HTDQVDTIFE  300
DLEDLEINLE DLGDSLNGDE NAYDTGHEVI YNSERTFSFN NKTMLCLDHR EYLEMNDLNV  360
PLSSTNQDRQ MVNAAYSGSS LIEQPCFPYS SFGAAANQNV PSCQYPSLYH SNNQMCHPAD  420
LDTLMHTSDS IQSALVQENF HSNANGGCNG SKAPWLDHDA NIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-41715616168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148655.10.0PREDICTED: NAC domain-containing protein 19
SwissprotQ9FY823e-82NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A0A0KHR30.0A0A0A0KHR3_CUCSA; Uncharacterized protein
STRINGXP_004165784.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-78NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  4. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  5. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  6. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]