PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.101370.1
Common NameCsa_6G486790, LOC101207587
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 339aa    MW: 36350.7 Da    PI: 5.9104
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.101370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.6e-21133182255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a+++++g
  Cucsa.101370.1 133 KYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAESAARAYDEAALRFRG 182
                     8********.**********76....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-33132191IPR001471AP2/ERF domain
PROSITE profilePS5103225.528133190IPR001471AP2/ERF domain
CDDcd000186.37E-34133192No hitNo description
SMARTSM003803.8E-37133196IPR001471AP2/ERF domain
PfamPF008472.8E-14133182IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23133191IPR016177DNA-binding domain
PRINTSPR003676.5E-12134145IPR001471AP2/ERF domain
PRINTSPR003676.5E-12156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADPEDNKAS EMFLNFSREM EMSAMVSALT HVVAGDTPDR DASYDSTWTS SSVSAPAETS  60
ALHGGGGYKR GRTLALENGG SVSAWSPSSV ISGNSSNVVI IRPQTGSATV ENSVYEYGGE  120
ITTMAEEPPA RRKYRGVRQR PWGKWAAEIR DPYKAARVWL GTFDTAESAA RAYDEAALRF  180
RGSKAKLNFP ENVRLRQLPT TESQTTHFTN SSPTNTLLAI PTHSEPIVSY RPTFNLQSSS  240
DASPANFLNF SDGQLPPPID MYSEIHFSSS SSMASSFYSS SAGLSNPQFS SSSSSSSPVV  300
SLSSPPLSFP GRRNSAGDNE HYSTAGWSEF FNHAASSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23132193466ATERF1
3gcc_A2e-23132193466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142046.10.0PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A0A0KKX40.0A0A0A0KKX4_CUCSA; Uncharacterized protein
STRINGXP_004160502.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-28ethylene response factor 110
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]