PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.101460.1

Common Name

Csa_6G486880

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 245aa MW: 27872.5 Da PI: 9.41

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.101460.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.2	2.9e-32	162	220	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++ +prsYYrCt ++C+vkk+ver a+dp++v++tYeg+H h+ Cucsa.101460.1 162 LDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHS 220 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-33	147	220	IPR003657	WRKY domain
SuperFamily	SSF118290	1.03E-28	154	221	IPR003657	WRKY domain
PROSITE profile	PS50811	29.31	157	222	IPR003657	WRKY domain
SMART	SM00774	7.5E-38	162	221	IPR003657	WRKY domain
Pfam	PF03106	7.4E-26	163	219	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1901141	Biological Process	regulation of lignin biosynthetic process
GO:1904369	Biological Process	positive regulation of sclerenchyma cell differentiation
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGSSASEEEM MVRLLKGGDQ VAAAVNAAAI TTNLICLPEN NNKNNIISVV QQSLKPLFFT 60 TTHHHHQQQE QQSLFPFCFP STTTTSHLLP SSPSSLWDER GVSFMRGRNA IGNYGGEDDH 120 NNENDGKPRL RVSTMKMKRI KGRKKVREPR FSFKTMTDVD VLDDGYKWRK YGQKVVKNTL 180 HPRSYYRCTE ENCKVKKRVE RLADDPRMVI TTYEGRHAHS PSDHNLEDSF MGHLPSSHLT 240 NFFC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	152	219	7	74	Probable WRKY transcription factor 4
2lex_A	2e-26	152	219	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984031	0.0	GU984031.1 Cucumis sativus WRKY protein (WRKY43) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656304.1	0.0	PREDICTED: probable WRKY transcription factor 13-like isoform X1
TrEMBL	A0A0A0KFC7	0.0	A0A0A0KFC7_CUCSA; Uncharacterized protein
STRING	XP_008440122.1	1e-137	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4079	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	5e-55	WRKY DNA-binding protein 13

Link Out ? help Back to Top
Phytozome	Cucsa.101460.1
Entrez Gene	101208878

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Ling J, et al. Genome-wide analysis of WRKY gene family in Cucumis sativus. BMC Genomics, 2011. 12: p. 471 [PMID:21955985] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]