PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.102050.10

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Protein Properties

Length: 1013aa MW: 114880 Da PI: 5.1184

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.102050.10	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.8	1.5e-16	15	105	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv++p + + + +++p f+++ +g + + t++d +g+sW ++l +k ++ ++++GWk Fv+ + Lk gDf+vF+++g+ f v Cucsa.102050.10 15 FFKVFLPGSCTLH--MSIPPAFMKHLNGT--FPEKATMQDHTGNSWCITL--EKLDDLLYFKNGWKAFVDYHSLKYGDFLVFQYHGHCLF--DV 100 7777755555544..8*****666666..6778***********..9999**************************997777..88 PP EEE-S CS B3 95 kvfrk 99 k+f k Cucsa.102050.10 101 KIFGK 105 88876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.75E-23	11	108	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-20	12	108	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.619	13	106	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-16	15	106	IPR003340	B3 DNA binding domain
CDD	cd10017	2.71E-18	15	103	No hit	No description
Pfam	PF02362	1.4E-13	15	104	IPR003340	B3 DNA binding domain
Pfam	PF09331	1.3E-29	690	822	IPR015410	Domain of unknown function DUF1985

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1013 aa Download sequence Send to blast
MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL 60 EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI 120 PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK 180 VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF 240 FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW 300 EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ 360 SEEILYLEYQ PLQTDIEDNR KSANMDSTEL VENSYDIEQN NMDDTSEVGG NLCDNIKENN 420 VDTTELSGNS YDNIKENNMD TTEPGGNSCD DIKENNVDST ELGGNLCDNI KENNVDTFEL 480 SGNSYDDIEE NNMDTAELGV NSCDDIEENN VDSTEHCGNL CDNIKDNNVD TTEEKQSPAS 540 VEPSRKKKKR KSASFEVQEQ KEETSEIDTD QDSRRGVETR QRKKIAEQSK GEDGKRKKRG 600 KRGKKSGISG TSSEHDDEVD VHKEYPLLLP RSSWATTQRI NLYSKLDVIS IIKNTLNERQ 660 LKKFKKSCFG NFLDLKISKF SSQLFYHLIR RQCCSKNRNE LWFNLEGRIH KFGMKDFALI 720 TGLNCGELPA IDMSKIQKGK FNKRYFGGEK TIRRAKLHKV FTEMDKGRNK DVVKMAKLYI 780 LEMFILGKQI RTGINHEYTL LIDDKKQFDS YPWGRISYEI TVDFVKKSIK SNDASAIGVG 840 GFPYALLVWA YETIPLLALN SNFLAMRISF GTPRMNNWAA GVHPEWKDLS EKVFQSEAFD 900 VQPLIATTTE MEMPYMIPFG GVKPSNEKNI SPVDQEHNSD ARTSYNKDHC NWKGSQSVSK 960 DGVENFLFTK IVNIEGILGS LVHDIDNLKS FFHKMCGTAN EAADSEKMRK PL*

Sequence ? help Back to Top

Protein Sequence Length: 1013 aa Download sequence Send to blast

MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL  60
EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI  120
PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK  180
VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF  240
FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW  300
EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ  360
SEEILYLEYQ PLQTDIEDNR KSANMDSTEL VENSYDIEQN NMDDTSEVGG NLCDNIKENN  420
VDTTELSGNS YDNIKENNMD TTEPGGNSCD DIKENNVDST ELGGNLCDNI KENNVDTFEL  480
SGNSYDDIEE NNMDTAELGV NSCDDIEENN VDSTEHCGNL CDNIKDNNVD TTEEKQSPAS  540
VEPSRKKKKR KSASFEVQEQ KEETSEIDTD QDSRRGVETR QRKKIAEQSK GEDGKRKKRG  600
KRGKKSGISG TSSEHDDEVD VHKEYPLLLP RSSWATTQRI NLYSKLDVIS IIKNTLNERQ  660
LKKFKKSCFG NFLDLKISKF SSQLFYHLIR RQCCSKNRNE LWFNLEGRIH KFGMKDFALI  720
TGLNCGELPA IDMSKIQKGK FNKRYFGGEK TIRRAKLHKV FTEMDKGRNK DVVKMAKLYI  780
LEMFILGKQI RTGINHEYTL LIDDKKQFDS YPWGRISYEI TVDFVKKSIK SNDASAIGVG  840
GFPYALLVWA YETIPLLALN SNFLAMRISF GTPRMNNWAA GVHPEWKDLS EKVFQSEAFD  900
VQPLIATTTE MEMPYMIPFG GVKPSNEKNI SPVDQEHNSD ARTSYNKDHC NWKGSQSVSK  960
DGVENFLFTK IVNIEGILGS LVHDIDNLKS FFHKMCGTAN EAADSEKMRK PL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	544	549	RKKKKR
2	544	550	RKKKKRK
3	545	550	KKKKRK
4	581	598	RKKIAEQSKGEDGKRKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657831.1	0.0	PREDICTED: uncharacterized protein LOC101221625 isoform X8
TrEMBL	A0A1S3B176	0.0	A0A1S3B176_CUCME; uncharacterized protein LOC103484737 isoform X1
STRING	XP_008440207.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	3e-20	B3 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.102050.10