PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.102050.16

Common Name

Csa_6G489950

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Protein Properties

Length: 962aa MW: 109302 Da PI: 4.9923

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.102050.16	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.9	1.4e-16	15	105	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv++p + + + +++p f+++ +g + + t++d +g+sW ++l +k ++ ++++GWk Fv+ + Lk gDf+vF+++g+ f v Cucsa.102050.16 15 FFKVFLPGSCTLH--MSIPPAFMKHLNGT--FPEKATMQDHTGNSWCITL--EKLDDLLYFKNGWKAFVDYHSLKYGDFLVFQYHGHCLF--DV 100 7777755555544..8*****666666..6778***********..9999**************************997777..88 PP EEE-S CS B3 95 kvfrk 99 k+f k Cucsa.102050.16 101 KIFGK 105 88876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.55E-23	11	108	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-20	12	108	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.619	13	106	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-16	15	106	IPR003340	B3 DNA binding domain
CDD	cd10017	3.03E-18	15	103	No hit	No description
Pfam	PF02362	1.3E-13	15	104	IPR003340	B3 DNA binding domain
Pfam	PF09331	1.2E-29	639	771	IPR015410	Domain of unknown function DUF1985

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL 60 EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI 120 PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK 180 VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF 240 FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW 300 EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ 360 SEEILYLEYQ PLQTDIEDNR KSANMDSTEL VENSYDIEQN NMDDTSEVGG NLCDNIKENN 420 VDTTELSGNS YDNIKENNMD TTEPGGNSCD DIKENNVDST ELGGNLCDNI KENNVDTFEL 480 SGNSYDDIEE NNMDTAELGV NSCDDIEENN VDSTEEKQSP ASVEPSRKKK KRKSASFEVQ 540 EQKEETSEID TDQDSRRGVE TRQRKKIAEQ SKEYPLLLPR SSWATTQRIN LYSKLDVISI 600 IKNTLNERQL KKFKKSCFGN FLDLKISKFS SQLFYHLIRR QCCSKNRNEL WFNLEGRIHK 660 FGMKDFALIT GLNCGELPAI DMSKIQKGKF NKRYFGGEKT IRRAKLHKVF TEMDKGRNKD 720 VVKMAKLYIL EMFILGKQIR TGINHEYTLL IDDKKQFDSY PWGRISYEIT VDFVKKSIKS 780 NDASAIGVGG FPYALLVWAY ETIPLLALNS NFLAMRISFG TPRMNNWAAG VHPEWKDLSE 840 KVFQSEAFDV QPLIATTTEM EMPYMIPFGG VKPSNEKNIS PVDQEHNSDA RTSYNKDHCN 900 WKGSQSVSKD GVENFLFTKI VNIEGILGSL VHDIDNLKSF FHKMCGTANE AADSEKMRKP 960 L*

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL  60
EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI  120
PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK  180
VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF  240
FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW  300
EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ  360
SEEILYLEYQ PLQTDIEDNR KSANMDSTEL VENSYDIEQN NMDDTSEVGG NLCDNIKENN  420
VDTTELSGNS YDNIKENNMD TTEPGGNSCD DIKENNVDST ELGGNLCDNI KENNVDTFEL  480
SGNSYDDIEE NNMDTAELGV NSCDDIEENN VDSTEEKQSP ASVEPSRKKK KRKSASFEVQ  540
EQKEETSEID TDQDSRRGVE TRQRKKIAEQ SKEYPLLLPR SSWATTQRIN LYSKLDVISI  600
IKNTLNERQL KKFKKSCFGN FLDLKISKFS SQLFYHLIRR QCCSKNRNEL WFNLEGRIHK  660
FGMKDFALIT GLNCGELPAI DMSKIQKGKF NKRYFGGEKT IRRAKLHKVF TEMDKGRNKD  720
VVKMAKLYIL EMFILGKQIR TGINHEYTLL IDDKKQFDSY PWGRISYEIT VDFVKKSIKS  780
NDASAIGVGG FPYALLVWAY ETIPLLALNS NFLAMRISFG TPRMNNWAAG VHPEWKDLSE  840
KVFQSEAFDV QPLIATTTEM EMPYMIPFGG VKPSNEKNIS PVDQEHNSDA RTSYNKDHCN  900
WKGSQSVSKD GVENFLFTKI VNIEGILGSL VHDIDNLKSF FHKMCGTANE AADSEKMRKP  960
L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	526	531	RKKKKR
2	526	532	RKKKKRK
3	527	532	KKKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657834.1	0.0	PREDICTED: uncharacterized protein LOC101221625 isoform X11
TrEMBL	A0A0A0KI50	0.0	A0A0A0KI50_CUCSA; Uncharacterized protein
STRING	XP_008440207.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	3e-20	B3 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.102050.16

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]