PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102090.1
Common NameCsa_6G489990, LOC101221146
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 255aa    MW: 29518.7 Da    PI: 8.7195
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44.1e-16151021099
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE-S CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.grsefelvvkvfrk 99 
                     +l+   +++pkkf+e++g+    s  + l+ ++g++W+v l  r+  ++ ++l++GW +F +   L+ g  +vFkl  gr++ +++v++f+ 
  Cucsa.102090.1  15 NLEDPKMMIPKKFVEDYGK--LLSNSVNLKLSDGKEWRVGL--RRATNGaVWLEEGWDKFSEHYCLEFGLLLVFKLFdGRRSSNFKVTIFDP 102
                     4555679**********84..48889***************..5555555*************************6636688889****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-193103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-193104IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-155101No hitNo description
PROSITE profilePS5086313.4656103IPR003340B3 DNA binding domain
SMARTSM010191.0E-107103IPR003340B3 DNA binding domain
PfamPF023621.1E-1215101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MPSSPKFFRI VLHRNLEDPK MMIPKKFVED YGKLLSNSVN LKLSDGKEWR VGLRRATNGA  60
VWLEEGWDKF SEHYCLEFGL LLVFKLFDGR RSSNFKVTIF DPTGVETKFI SPSPQIKEES  120
DSDSDESLES LTLHGDLKKR KNVSVSCSQS RRKMRKDDLF TVKTELEEEE EEEECKYIFR  180
EIPRCKERVI PKHEAKVSRK EQPSPEKVET VQRFSSKSDR KPSFEVVMRQ SNVQGRFNMV  240
SPSCFISPPL NSLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-137LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-137LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142019.21e-173PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBLA0A0A0KG441e-172A0A0A0KG44_CUCSA; Uncharacterized protein
STRINGXP_004170515.11e-173(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-14B3 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]