PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102400.1
Common NameCsa_6G490860, LOC101218067
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 194aa    MW: 22029.4 Da    PI: 8.9088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.9e-18112161255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr  ++rg+W+AeIrdp+    r  r++lg+f taeeAa+a+++a+ +++g
  Cucsa.102400.1 112 RFRGVR-ERRRGKWAAEIRDPR----RrIRVWLGTFQTAEEAARAYDRAAIEFRG 161
                     59***9.7779*********83....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-35112176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-28112171IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-19112171IPR016177DNA-binding domain
PROSITE profilePS5103223.657112170IPR001471AP2/ERF domain
PfamPF008473.1E-11112161IPR001471AP2/ERF domain
PRINTSPR003675.8E-9113124IPR001471AP2/ERF domain
CDDcd000181.13E-23123172No hitNo description
PRINTSPR003675.8E-9135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSGPSRDLVT APFGSRLGVE EENSIIVSAL TYVLTDTRIG LDHNDDYSNN HSGTAVLWFP  60
SANDECKKCQ FANCLGCNYF EDGNNQNQNV VKDEDNNDNG NKKKGRKKMK GRFRGVRERR  120
RGKWAAEIRD PRRRIRVWLG TFQTAEEAAR AYDRAAIEFR GGDRAKLNFP ASDYQQNEIP  180
QGNREPNLEE IKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-16113170663ATERF1
3gcc_A4e-16113170663ATERF1
5wx9_A6e-161111701372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111RKKMKGR
2105120RKKMKGRFRGVRERRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-157LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-157LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142007.11e-142PREDICTED: ethylene-responsive transcription factor ERF109
TrEMBLA0A0A0KJJ41e-141A0A0A0KJJ4_CUCSA; Uncharacterized protein
STRINGXP_004142007.11e-142(Cucumis sativus)
STRINGXP_004157207.11e-142(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2443133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-12ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]