PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102530.1
Common NameCsa_6G491000, LOC101217594
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 416aa    MW: 45759.1 Da    PI: 5.0435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48.1e-16178224455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Cucsa.102530.1 178 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 224
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-20171234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-20171234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.88E-17177228No hitNo description
PfamPF000102.7E-13178224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDHSVPNNCD RNACSSSTWT LPAPALSSSS SSPPDDISLF LQQILRRSSS SAPHFSLLSP  60
SPSIFSELTC NIRAFTPPTH NLPPPYGPPN AVPDEISAVD SSEQFANSPS SGVLHDPLRT  120
FPTSIPPNAS STSVGASDHN ENDEFDCESE EGLEALVEEL PTKPNPRSSS KRSRAAEVHN  180
LSEKRRRSRI NEKMKALQNL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML SMRNGLSLHP  240
MNLPGSLQYL QLSHMRMDFG EENRSISSDQ ERPNQIFLSL PDQKAASIHP FMSDIGRTNA  300
AETPFELVPP IQAHLVPFYL SESSKSKEIC SRDLLRDDHQ AVNVNVSQSE TTPLVSCPYN  360
IPETPDLQGL QNGLSVEPCI IEGNRSGVLL NYTPEHSLVF PSPFNGIKQE DRLKQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142005.20.0PREDICTED: transcription factor SPATULA
TrEMBLA0A0A0KLD30.0A0A0A0KLD3_CUCSA; Uncharacterized protein
STRINGXP_004157205.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-39bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]