PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.103380.1
Common NameCsa_6G495860
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 156aa    MW: 18619.9 Da    PI: 10.2895
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.103380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.72.2e-123277550
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                    ++ rr+++NRe+ArrsR+RK++ +e+L++ v +L+ eN++L ++l 
  Cucsa.103380.1 32 RKRRRMESNRESARRSRLRKQKHLENLRNLVNKLKVENRELSNRLR 77
                    57899************************************96664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-92576No hitNo description
SMARTSM003381.3E-132892IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.1163093IPR004827Basic-leucine zipper domain
PfamPF001701.1E-93277IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-93280No hitNo description
CDDcd147022.33E-133377No hitNo description
PROSITE patternPS0003603550IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MSSSSSENPD EPEAIDPGPF EPDRKVEVVD ERKRRRMESN RESARRSRLR KQKHLENLRN  60
LVNKLKVENR ELSNRLRFTV YEVNRVRTEN DHLQTEHTIL RRKLMCSRQV LIFRQYQREM  120
GYNAFEKPPT ISQSQSQSQY QYILNNNNNN LIINC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13135RKRRR
23152RKRRRMESNRESARRSRLRKQK
34450RRSRLRK
44451RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022133118.12e-63basic leucine zipper 9-like
TrEMBLA0A0A0KJR41e-107A0A0A0KJR4_CUCSA; Uncharacterized protein
STRINGXP_008440425.17e-87(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54353254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.23e-25basic leucine-zipper 6
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]