PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.103630.2

Common Name

Csa_6G497120

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 238aa MW: 27422.8 Da PI: 8.1925

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.103630.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.2e-09	61	103	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR++i++ f L l+P + K +Ka++L A++++k+Lq Cucsa.103630.2 61 AERRRREKIRQNFIALSALIPGL-----IKRDKASVLGGAIKFVKELQ 103 7*******************9.....69***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.985	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-10	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-13	60	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-13	61	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.91E-9	61	107	No hit	No description
Pfam	PF00010	1.2E-6	61	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MEISSAKWLS ELEMMECSYE YERMKKYPHD YTLDELNFPA MEKVNNSRSS GQLISFGDYS 60 AERRRREKIR QNFIALSALI PGLIKRDKAS VLGGAIKFVK ELQERLKWAE EKEKEQKRVI 120 KSVVFVKTIN LDSDFDNETF SLDENGGRFS VRSVPTIETR VLEKDVLVRI HCKKHKGCYT 180 SIVSEIEKLK LTIVNSCVFP FGQSRLDITI IAEMEAGFCM TPMDLGKKLR ETLIEFI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	66	ERRRRE
2	62	67	RRRREK

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-133	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-133	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143535.1	1e-154	PREDICTED: transcription factor bHLH25-like
Swissprot	Q9T072	7e-45	BH025_ARATH; Transcription factor bHLH25
TrEMBL	A0A0A0KLM8	1e-148	A0A0A0KLM8_CUCSA; Uncharacterized protein
STRING	XP_004143535.1	1e-153	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-47	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.103630.2

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]